------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 3780 - 3857 Found by: Infernal (score=16.77) Covels (score=14.23) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -19.83 ..(((((((.......(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ((((({(((((.....{[[[({((((((((.................))))))))})]]]}.....-.)))))}))))) target AGGUGUGGACAGUGAAUGAAGUGUUCUGGGACAAAGUCUAAUGGACCUCCAGGGCUCGGAUGGAAA-GUGUCCUCACUU **** ^^^ **** ------- SECIS element -- id:3 -- grade:C ---- Chromosome = your_sequence Strand = + Positions = 10033 - 10115 Found by: Infernal (score=11.84) Covels (score=1.72) Stem2 length = 9 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -17.1 ..(((((((.......(((((((((((((((.......................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg--------cgggccaggcCuGAUGuuu-uuucaugaccggc .((((((((---....([[{{(((({{(((((.....................)))))}}))))}}]]).....-...)))))))). target UGCAGGAAG---UGAAUGAUUGCUUGGUCAAAACAGAAUCAAAAUUAAUUUUAUUUGGGGAAGUCUGAGGAAAA-AGCCUUCCUGCU **** ****